PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0033ss01440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 284aa    MW: 30998 Da    PI: 8.2416
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0033ss01440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.53.6e-3460117359
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                         v+YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++ e
  Vang0033ss01440.1  60 VVTYKECLKNHAASLGGHALDGCGEFMPSSSTNpTDPRSLKCAACGCHRNFHRRDPRE 117
                        689**************************99999********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-2361119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.0E-2961114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.6E-3262114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.82263114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-28145211IPR009057Homeodomain-like
SuperFamilySSF466894.66E-18145211IPR009057Homeodomain-like
TIGRFAMsTIGR015654.4E-26150207IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDLTSSCTHT IQTFDADTKT TPPVNPTNNT TPKSLSFTNG TPKRHPSTTA APPPQPPSMV  60
VTYKECLKNH AASLGGHALD GCGEFMPSSS TNPTDPRSLK CAACGCHRNF HRRDPREHTL  120
GTGYSTPSDE HPHHRGLTFS SVMLKSENPK KRYRTKFSKE QKEKMQNFSE KLGWRMQKGD  180
DGLVQQFCND IGVSRGVFKV WMHNNKNTFR RRLDQGENAN PNANANSPQS IGDHDDGNNT  240
SGGGGFDSDI NNPYNPSSNN NDIHMNEGDG CGNVHVSLNG LSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-221512081875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507232.11e-108PREDICTED: zinc-finger homeodomain protein 11-like
TrEMBLA0A151RTI41e-106A0A151RTI4_CAJCA; ZF-HD homeobox protein At4g24660 family
STRINGGLYMA01G05810.11e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-56zinc finger homeodomain 1